Ok so we just tried a treat

He looked at me funny when I told him I wanted him to run into the room

He is so use to me saying no running and quiet.
So as soon as she barked he told her "No" and gave her a treat when she stoped. We did it 5 times, by the 5th one he couldn't get her to bark

So I told him "we are going to do this for a few days to help her understand that you aren't trying to hurt her." I told him as soon as she learns that she doesn't have to be afraid of him we will teach he to shake

He is very excited