Update: 
Brandi is much better. Her eyes, mouth and lips are completely healed. There is some scarring form the ulcers on her lips. Her throat seems to still be tender. She doesn't seem to be handling the dry kibble well. She has always been one to swallow and think about chewing later which has caused her some issues with getting the food stuck in her throat, so we are back on the moistened kibble for now.
She only has a few days of meds left and we have an appointment with our vet on Friday. I will let you know how she does.