I'm no expert, but it sounds like she just needs some time to adjust to everything. Gently lead her to whatever she is afraid of and she will adjust to her new surroundings.
When I first got Ruger he would cry everytime I got in the shower and closed the curtain. Now he just lies on the rug and falls asleep. I didn't overdo it with lots of talk and petting. He just figured out I wasn't going anywhere by himself. |