It would not be a good idea to give them yourself because if she reacts at home, it would be harder to get her help quickly.
She should be premedicated with Benadryl before vaccines. If she was given th "L", then that is likely the problem.
You and you alone have control over what goes into her even if a vet is doing it. It would be unethical and most likely illegal for a vet to give anything without your consent.
You'll need to find a good vet that is willing to work with you if you want to continue to vaccinate (and if just the L was suspected, most vets would).
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