She maybe attempting to put them in a quiet place where no one can see them. Put her and the babies in a nice, quiet warm place.
However, this is something you may want to consider and I don't mean this to scare you but, there is a possibility that something is wrong with the puppies and she knows it, mother's moving pups around is an indication of a problem......Check for the pups for hydration, check their body temp, are they nursing well (weigh them twice a day).
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