Welcome to Yorkie Talk...
Being you have only had Tobey 2 days now I wouldn't expect too much too quickly. There is so much in Tobey's new world now that he wants to explore, give him time.
My only suggestion is to NOT let Tobey have free run of the house. I am not familiar with crate training mixed with the potty pad inside the crate ?? Unless of course the crate is more like a huge sized pen. If the crate is small, you might wanna take the pad out, offer a toy and blankey and take Tobey out often to the potty pad in a new designated area maybe.n I just don't think it's a good idea to have a Yorkie trained to potty where he/she lays. Again, if you had a large pen then it would be fine.
Good luck.