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  I agree with Luzangela - you may have to wake up every 2 -3 hours for a few weeks.  The other thing you can do, is throw in some food or treats in the crate and let him eat it in the crate.  They won't poop (or are not supposed to) where they eat.
 Also, when is the last time of the day that you feed your puppy.  All food and water should be taken away after 8pm.  That should give him time to poop and pee before bed time.
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