I would say that it sounds like you taking her to the vet must have her scared of you. I would give it a chance if I were you. She will probablly get over it. I would just keep paying alot of attention to her. I have to take my Duke to the vet Monday for his 2nd set of shots which will be the first time for me taking him. I hope he doesn't act like he doesn't like me after that.
Good Luck